Thank you for joining us for our computational biology and genomics workshop. Here is a summary of the topics that we are looking forward to covering over the course of the week.
Workshop registration is now open!
Monday: Introduction to high-throughput sequencing and computational biology
- 09:00-10:30 Introduction to Todos Santos and Group Discussion
- 10:30-11:00 High-Throughput Sequencing Technologies
- 11:00-12:00 UNIX and Command Line Tools
- 12:00-13:00 Lunch
- 13:00-16:00 Manipulating and Obtaining Genomics Data
- 16:00-17:30 Alignment and Read Mapping
Tuesday: RNA-seq
- 09:00-12:00 RNA-seq Data Analysis I
- 12:00-13:00 Lunch
- 13:00-17:00 RNA-seq Data Analysis II
- 17:00-18:30 Research Presentations (with Refreshments)
Wednesday: Comparative genomic analysis
- 09:00-14:00 Local Excursion and Lunch at Ranch in Sierra de La Laguna Natural Protected Area
- 14:00-15:30 Assembly and Annotation
- 15:30-17:00 Variant Calling
Thursday: Comparative genomic analysis (cont.) and Data Visualization
- 09:00-10:30 Local BLAST and Comparative Genomics
- 10:30-12:00 Metagenomics and Microbial Diversity
- 12:00-13:00 Lunch
- 13:00-13:30 Introduction to R, R Markdown, and Data Visualization
- 13:30-14:30 Importing and Manipulating Data in R
- 14:30-15:15 Plotting Genomic Data with R and ggplot
- 15:15-16:00 Figure Drawing in R
- 16:00-17:00 Circular Representations of Genomic Data with Circos
- 17:00-20:00 Workshop Dinner
Friday: Scripting and GitHub
- 09:00-10:00 Code Management (GitHub)
- 10:00-12:00 Bash Scripting
- 12:00-13:00 Lunch
- 13:00-17:00 Introduction to Python Scripting